Prompt-based interface for 10x Genomics Cloud: analyze single-cell data via conversational prompts. Create projects, run Cell Ranger count/multi analyses, upload FASTQ files, list references and annotation models, check billing and analysis status. Install via Claude extension or .mcpb from GitHub.
10x Genomics Cloud prompt-based interface for 10x genomics cloud: analyze single-cell data via conversational prompts. create projects, run cell ranger count/multi analyses, upload fastq files, list references and annotation models, check billing and analysis status. install via claude extension or .mcpb from github.. The official 10x Genomics Cloud MCP server provides AI agents with standardized access to 10x Genomics Cloud's services, enabling powerful automation and integration capabilities that enhance developer productivity and streamline workflows.
This official MCP server is maintained and verified by 10x Genomics Cloud, ensuring reliability, security, and up-to-date functionality. Unlike community-maintained servers, this official integration provides long-term support, comprehensive documentation, and direct vendor assistance. The server is hosted on 10xgenomics.com, guaranteeing secure and reliable access to 10x Genomics Cloud's services.
Whether you're building AI-powered applications, automating workflows, or enhancing your development tools, the 10x Genomics Cloud MCP server provides a standardized way to connect AI agents with 10x Genomics Cloud's extensive platform capabilities. This integration enables natural language interactions with 10x Genomics Cloud, making it easier than ever to leverage 10x Genomics Cloud's features through AI assistants like Claude, ChatGPT, and Cursor.
https://www.10xgenomics.com/support/software/cloud-analysis/latest/tutorials/cloud-mcp-serverGo to Settings → Cursor Settings
Click "Add new global MCP Server"
Paste the MCP configuration into mcp.json and restart
Or manually add to your mcp.json:
{
"mcpServers": {
"10x-genomics-cloud": {
"url": "https://www.10xgenomics.com/support/software/cloud-analysis/latest/tutorials/cloud-mcp-server"
}
}
}The official 10x Genomics Cloud MCP server enables AI agents to:
These capabilities make it easy for AI agents to work with 10x Genomics Cloud as part of a larger automation strategy, enabling seamless integration between AI assistants and your existing tools.
The 10x Genomics Cloud MCP server provides 13 tools for AI agents to interact with the platform. Use the search below to find specific tools.
| Tool Name | Description |
|---|---|
check_billing | Check billing information |
create_analysis | Create and run a Cell Ranger count or multi analysis |
create_project | Create a new 10x Cloud project |
download_outputs | Download analysis output files to local path |
get_analysis_status | Check run status of an analysis |
get_multi_config_spec | Check multi config CSV specifications |
list_analyses | List analyses in a project or across all projects |
list_analysis_outputs | List output files from an analysis |
list_annotation_models | List annotation models available for cell annotation |
list_prebuilt_references | List pre-built transcriptome references |
list_project_files | List files in the current project |
list_projects | List projects in your 10x Cloud account |
upload_files | Upload input files (FASTQ, CSV) to a project |
Last updated: March 1, 2026 at 12:00 PM
AI agents can use the 10x Genomics Cloud MCP server to automate repetitive tasks and manage workflows within 10x Genomics Cloud's platform.
The MCP server allows AI agents to query and retrieve data from 10x Genomics Cloud, enabling intelligent data analysis and insights.
Developers can integrate 10x Genomics Cloud capabilities directly into their AI coding assistants for seamless workflows.
Visit https://www.10xgenomics.com, create an account, and generate an API key from your dashboard. Most tools offer a free tier to get started, making it easy to begin using the 10x Genomics Cloud MCP server.
Yes, this MCP server is officially provided and maintained by 10x Genomics Cloud. The endpoint https://www.10xgenomics.com/support/software/cloud-analysis/latest/tutorials/cloud-mcp-server is hosted on their official domain 10xgenomics.com, ensuring reliability and security.
The 10x Genomics Cloud MCP server requires appropriate API credentials and permissions based on the operations you want to perform. Check the documentation for specific permission requirements.
Yes, you can configure the same MCP server across Cursor, Claude Desktop, Cline, and other MCP-compatible clients simultaneously. Each client maintains its own configuration.
The MCP server itself is free to use, but you may need a 10x Genomics Cloud account and API access, which may have its own pricing tiers. Check https://www.10xgenomics.com for current pricing information.
The 10x Genomics Cloud MCP server enables AI agents to manage cloud infrastructure and deployments. Prompt-based interface for 10x Genomics Cloud: analyze single-cell data via conversational prompts. Create projects, run Cell Ranger count/multi analyses, upload FASTQ files, list references and annotation models, check billing and analysis status. Install via Claude extension or .mcpb from GitHub. This allows you to interact with 10x Genomics Cloud's platform through natural language commands in your AI assistant.
Ensure your API key is correctly configured and your network allows outbound connections to 10xgenomics.com. Verify that the MCP endpoint URL https://www.10xgenomics.com/support/software/cloud-analysis/latest/tutorials/cloud-mcp-server is accessible from your network.
Verify your API key is valid and has not expired. Generate a new key from https://www.10xgenomics.com if needed. Make sure you're using the correct authentication method as specified in the documentation.
Check 10x Genomics Cloud's status page for any ongoing incidents. Try restarting your MCP client and verify that the server endpoint is correct. If issues persist, consult the official documentation or support channels.
Explore other official MCP servers that work well with 10x Genomics Cloud:
The Model Context Protocol (MCP) is an open standard that enables AI models to securely connect to external APIs, tools, and data sources. This official MCP server from 10x Genomics Cloud provides standardized access to their services, allowing AI agents to interact with 10x Genomics Cloud's platform seamlessly.
To manage all your MCP servers in one place, use Apigene's MCP Gateway, which provides centralized management, security, and governance for all your MCP server connections.
Learn more about MCP in our complete guide or browse our FAQ for common questions.
Domain
10xgenomics.com
Website
https://www.10xgenomics.comMCP Endpoint
https://www.10xgenomics.com/support/software/cloud-analysis/latest/tutorials/cloud-mcp-server